It's no biggy. Might just be hard coded into the mkxap and mkpatch scripts to look in /bin ?
I've never tried using those scripts
on the minibook. Always made them on my desktop.
Cheers.
EDIT: Just realized a dumb error in my jwmrc file. In the utilities folder i have 'tabbed terminal'. When you run it, its
all black. I forgot to set foreground color to gray, so the background
and text is black.

Edit /etc/jwm/jwmrc and add -fg gray so it looks like this:
mrxvt -fn 6x12 -bg black -fg gray